WebFeb 26, 2024 · The circRNA bioinformatics toolbox is growing, with the exception of a slight decline in 2024. As the field grows in maturity, additional tools are in development. … WebJan 6, 2024 · miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis. rna-seq-analysis mirna rnaseq-pipeline circrna-pipeline mirna-seq Updated Apr 27, 2024; Perl; ajitjohnson / arseq Star 7. Code Issues Pull requests An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment) ...
Frontiers Circular RNA as an Additional Player in the Conflicts ...
Web2 days ago · Download Citation Full-length circular RNA profiling by nanopore sequencing with CIRI-long Circular RNAs (circRNAs) have important roles in regulating developmental processes and disease ... To systematically investigate the expression profile of circRNAs in hepatocellular carcinoma (HCC), we applied CIRI2 and CIRIquant to 40 RNA-seq datasets of normal and tumor liver samples derived from HCC patients40 and a total number of 46,984 circRNAs were detected and quantified in these samples. We … See more To rigorously evaluate the challenges in current quantification of circRNA expression, we collected 63 transcriptomic samples from six previous studies16,17,18,19,20,21,22, … See more Current computational approaches on circRNA identification are mainly based on the detection of BSJ reads. Most of these methods (e.g., CIRCexplorer2, DCC, find_circ) rely on … See more The inconsistency of RNase R digestion efficiency in circRNA library preparation for different samples may lead to biased circRNA expression … See more To evaluate the performance of existing algorithms on circRNA quantification, we used CIRI-simulator12 to generate simulated datasets for performance comparison. We firstly simulated RNA-seq reads with different … See more intec frankfurt
A Brief Review of circRNA Biogenesis, Detection, and Function
WebDec 31, 2024 · Circular RNA (circRNA) is a non-coding molecule produced through alternative splicing of one or more exons of a gene in the presence of an RNA-induced … WebRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. Version 3.11.1 Published 2 weeks ago. 9 ... circrna circrna-pipeline circrna-prediction … WebApr 29, 2024 · In module 1, the project folder is set up to start the analysis.The project folder contains project files and the circRNA prediction results. In detail, project files … jobs weston super mare hospital